Theory of Nanostructured Materials Facility, Molecular Foundry
2004 Ph.D. in Theoretical Physics, Linacre College, University of Oxford. Supervised by Juan P. Garrahan and David Sherrington
2001 MPhys, Trinity College, University of Oxford
Our group studies nanoscale pattern formation, self-assembly and phase change using the tools and techniques of statistical mechanics. At the Molecular Foundry, we work in collaboration with outside Users from academia and industry. Our recent User projects include work on molecular tilings, multicomponent self-assembly, and peanut-shaped amphiphilic nanoparticles. Please email me for more information about the Molecular Foundry User program in statistical mechanics.
- Dr. Ranjan Mannige (May 2012-). Ranjan is working to understand the structure, dynamics and uses of peptoid nanomaterials, in collaboration with Ron Zuckermann, Molecular Foundry.
- Dr. Tom Haxton (Aug 2010-). Tom is developing a coarse-grained model for peptoids, in collaboration with Ron Zuckermann, Molecular Foundry.
- Dr. Lester Hedges (Jan 2010-). Lester is studying fundamental aspects of nucleation and crystallization. He is supported by the Center for Nanoscale Control of Geologic CO2, an Energy Frontier Research Center.
- Katherine Klymko (Oct 2012-). Katie is working in collaboration with our group and with Phill Geissler, at UC Berkeley, to understand self-assembly "far" from equilibrium.
- Dr. Dina Mirijanian (Jun 2009-Jul 2012). Dina developed an atomistic forcefield for peptoids, in order to understand the structure and stability of peptoid nanosheets.
- Do hierarchical structures assemble best via hierarchical pathways?, T. K. Haxton, S. Whitelam*, preprint here
- Competing thermodynamic and dynamic factors select molecular assemblies on a gold surface, T. K. Haxton, H. Zhou, I. Tamblyn, J.B. Neaton, T. Heinz*, S. Whitelam*, submitted
- Development and use of an atomistic CHARMM forcefield for peptoid simulation, D.T. Mirijanian, R.V. Mannige, R.Z. Zuckermann, S. Whitelam*, submitted
- Self-assembly of multicomponent structures in and out of equilibrium, S. Whitelam*, R. Schulman*, L.O. Hedges, Phys. Rev. Lett. 109, 265506
- Patterning a surface so as to speed nucleation from solution, L.O. Hedges, S. Whitelam*, Soft Matter 8, 8624 (2012)
- Uncovering the intrinsic size dependence of hydriding phase transformations in nanocrystals, R. Bardhan, L.O. Hedges, C.L. Pint, A. Javey, S. Whitelam*, J.J. Urban*, submitted
- Real-time Imaging of Pt3Fe Nanorod Growth in Solution, H.-G. Liao, L. Cui, S. Whitelam, H. Zheng*, Science 336, 6084, 1011 (2012)
- Design rules for the self-assembly of a protein crystal, T.K. Haxton and S. Whitelam*, Soft Matter 8, 3558 (2012)
- Random and ordered phases of off-lattice rhombus tiles, S. Whitelam*, I. Tamblyn, P.H. Beton, J.P. Garrahan, Phys. Rev. Lett. 108, 035702 (2012)
- Analyzing mechanisms and microscopic reversibility of self-assembly, J. Grant, R.L. Jack*, S.Whitelam*, J. Chem. Phys. 135, 214505 (2011)
- Limit of validity of Ostwald's rule of stages in a statistical mechanical model of crystallization, L.O. Hedges and S. Whitelam*, J. Chem. Phys. 135, 164902 (2011)
- Electrostatics and aggregation: how charge can turn a crystal into a gel, J. Schmit*, S. Whitelam and K. Dill, J. Chem. Phys. 135, 085103 (2011)
- Approximating the dynamical evolution of systems of strongly-interacting overdamped particles, S. Whitelam*, Molecular Simulation, 37, 7 (2011) ; preprint here
- Folding of a Single-Chain, Information-Rich Polypeptoid Sequence into a Highly-Ordered Nanosheet, R. Kudirka, H. Tran, B. Sanii, K.-T. Nam, P. H. Choi, N. Venkateswaran, R. Chen, S. Whitelam, and R. N. Zuckermann* Biopolymers: Peptide Science (2011)
- Control of pathways and yields of protein crystallization through the interplay of nonspecific and specific attractions, S. Whitelam*, Phys. Rev. Lett. 105, 088102 (2010) (version with high-resolution images here)
- Microscopic implications of S-DNA, S. Whitelam*, P.L. Geissler, and S. Pronk Phys. Rev. E 82, 021907 (2010)
- Nonclassical assembly pathways of anisotropic particles, S. Whitelam*, J. Chem. Phys. 132, 194901 (2010)
- Self-assembly of amphiphilic peanut-shaped nanoparticles, S. Whitelam* and S.A.F. Bon, J. Chem. Phys. 132, 074901 (2010)
- Transformation from spots to waves in a model of actin pattern formation, S. Whitelam*, T. Bretschneider and N.J. Burroughs, Phys. Rev. Lett. 102, 198103 (2009)
- The impact of conformational fuctuations on self-assembly: Cooperative aggregation of archaeal chaperonin proteins, S. Whitelam, C. Rogers, A. Pasqua, C. Paavola, J. Trent and P. L. Geissler, Nano Letters, 9, p. 292-297 (2009)
- Stretching chimeric DNA: a test for the putative S-form, S. Whitelam, S. Pronk and P.L. Geissler, J. Chem. Phys. 129, 205101 (2008)
- The role of collective motion in examples of coarsening and self-assembly, S. Whitelam, E. H. Feng, M. F. Hagan, P. L. Geissler, Soft Matter 5, 6, p1251 (2009)
- There and (slowly) back again: Entropy-driven hysteresis in a model of DNA overstretching, S. Whitelam, S. Pronk and P.L. Geissler, Biophys. J. 94, 2452 (2008)
- Avoiding unphysical kinetic traps in Monte Carlo simulations of strongly attractive particles, S. Whitelam and P.L. Geissler, J. Chem. Phys. 127, 1 (2007)
- Two-stage coarsening mechanism in a kinetically constrained model of an attractive colloid, S. Whitelam and P. L. Geissler, Phys. Rev. E 73, 016115 (2006)
- Renormalization group study of a kinetically constrained model for strong glasses, S. Whitelam, L. Berthier and J.P. Garrahan, Phys. Rev. E 71, 026128 (2005)
- Facilitated spin models in one dimension: a real-space renormalization group study, S. Whitelam and J.P. Garrahan, Phys. Rev. E 70, 046129 (2004)
- Geometrical picture of dynamical facilitation, S. Whitelam and J. P. Garrahan, J. Phys. Chem. B 108, 6611 (2004) (issue in honor of H.C. Andersen)
- Dynamic criticality in glass-forming liquids, S. Whitelam, L. Berthier and J. P. Garrahan, Phys. Rev. Lett. 92, 185705 (2004)
- Microscopic implications of competing pictures of DNA overstretching, S. Whitelam Physics of Life Reviews, Elsevier 2010 (invited ‘open peer’ comment on "Biophysical characterization of DNA binding from single molecule force measurements", by Kathy R. Chaurasiya et al.)
2007-2008 Postdoctoral Fellow, Systems Biology Centre, University of Warwick. Supervised by Nigel Burroughs
2004-2007 Postdoctoral Fellow, Department of Chemistry, University of California at Berkeley. Supervised by Phillip L. Geissler
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